C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretogranin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049972 Scg2-001 ENSMUSG00000050711 10090 - 1:79434669-79440120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonLiverENSMUST00000049972
Transcript ID Adrenal Bladder Brain Colon Liver
ENSMUST00000049972 12.362±2.93 0.131±0.01 8.220±1.99 0.459±0.19 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AL CIL_0004AL_0003 CGP 1:78816758-79440120
CIL_0004AM CIL_0004AM_0004 CGP 1:79434669-79671972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 ISS MAPK cascade
GO:0001525 IDA angiogenesis
GO:0001938 ISS positive regulation of endothelial cell proliferation
GO:0005125 ISS cytokine activity
GO:0005615 ISS extracellular space
GO:0006928 ISS cellular component movement
GO:0030141 IEA secretory granule
GO:0035556 ISS intracellular signal transduction
GO:0042056 ISS chemoattractant activity
GO:0048245 ISS eosinophil chemotaxis
GO:0050918 IEA positive chemotaxis
GO:0050930 ISS induction of positive chemotaxis
GO:2000352 ISS negative regulation of endothelial cell apoptotic process
GO:2001237 IEA negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000305409 SCG2-001 protein_coding Homo_sapiens 0 2228
ENST00000421386 SCG2-003 protein_coding Homo_sapiens 0 442
ENST00000433889 SCG2-002 protein_coding Homo_sapiens 0 401

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