C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: doublesex and mab-3 related transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048935 Dmrt3-201 ENSMUSG00000042372 10090 + 19:25610537-25623920 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000048935
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048935 0.030±0.01 0.018±0.01 0.722±0.73 0.017±0.01 0.013±0.00 0.164±0.04 0.022±0.00 0.013±0.01 0.280±0.12 0.024±0.00 0.285±0.19 0.339±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UR CIL_0008UR_0002 VISTA 19:25304027-25904976
CIL_0008NH CIL_0008NH_0002 VISTA 19:25307278-25909178
CIL_0006Y7 CIL_0006Y7_0003 CGP 19:25505618-25623920
CIL_0007KZ CIL_0007KZ_0002 UCNEbase 19:25568311-25924074
CIL_000644 CIL_000644_0003 CGP 19:25610537-25679010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007628 IMP adult walking behavior
GO:0019226 IMP transmission of nerve impulse
GO:0021521 IMP ventral spinal cord interneuron specification
GO:0042487 IMP regulation of odontogenesis of dentin-containing tooth
GO:0043565 IDA sequence-specific DNA binding
GO:0046661 IMP male sex differentiation
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000190165 DMRT3-001 protein_coding Homo_sapiens 0 1635
ENST00000404795 DMRTA2-002 protein_coding Homo_sapiens 7e-34 150
ENST00000418121 DMRTA2-001 protein_coding Homo_sapiens 6e-34 150

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