C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TSR1 20S rRNA accumulation
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045807 Tsr1-001 ENSMUSG00000038335 10090 + 11:74898078-74909342 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaENSMUST00000045807
Transcript ID Bladder Brain Liver Muscle Ovary Placenta
ENSMUST00000045807 9.121±1.66 5.055±0.00 9.517±4.88 4.425±1.06 11.928±0.44 12.408±3.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005730 ISS nucleolus
GO:0008150 ND biological_process
GO:0042255 ISS ribosome assembly
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301364 TSR1-002 protein_coding Homo_sapiens 0 2403
ENST00000344595 SRR-001 protein_coding Homo_sapiens 0 287
ENST00000571806 TSR1-004 nonsense_mediated_decay Homo_sapiens 4e-21 106
ENST00000575049 TSR1-005 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000576112 TSR1-007 protein_coding Homo_sapiens 0 477
ENST00000576202 TSR1-001 retained_intron Homo_sapiens 0 215
ENST00000576848 SRR-005 protein_coding Homo_sapiens 0 287

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