C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, CCHC domain containing 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043368 Zcchc11-201 ENSMUSG00000034610 10090 + 4:108459426-108559415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043368
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043368 2.173±1.12 1.835±0.69 11.216±6.65 2.234±0.00 1.668±0.23 1.145±0.00 4.566±0.72 1.603±0.00 1.745±0.38 13.240±1.29 7.695±1.47 1.794±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VF CIL_0001VF_0002 CGP 4:108400390-108559421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001816 IDA cytokine production
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA:ISS cytoplasm
GO:0008270 IEA zinc ion binding
GO:0010586 IMP miRNA metabolic process
GO:0010587 ISS miRNA catabolic process
GO:0019827 ISS stem cell maintenance
GO:0031054 ISS pre-miRNA processing
GO:0031123 IDA RNA 3'-end processing
GO:0031664 IDA regulation of lipopolysaccharide-mediated signaling pathway
GO:0032088 IDA negative regulation of NF-kappaB transcription factor activity
GO:0032755 IMP positive regulation of interleukin-6 production
GO:0044822 IEA poly(A) RNA binding
GO:0050265 IDA RNA uridylyltransferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070102 IMP interleukin-6-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257177 ZCCHC11-005 protein_coding Homo_sapiens 0 4490
ENST00000355809 ZCCHC11-003 protein_coding Homo_sapiens 0 558
ENST00000371541 ZCCHC11-002 processed_transcript Homo_sapiens 0 3219
ENST00000371544 ZCCHC11-001 protein_coding Homo_sapiens 0 4503
ENST00000466440 ZCCHC11-006 retained_intron Homo_sapiens 0 804
ENST00000470212 ZCCHC11-008 retained_intron Homo_sapiens 0 446
ENST00000470626 ZCCHC11-013 protein_coding Homo_sapiens 0 335
ENST00000471623 ZCCHC11-015 protein_coding Homo_sapiens 0 422
ENST00000473856 ZCCHC11-014 nonsense_mediated_decay Homo_sapiens 0 1166
ENST00000474453 ZCCHC11-016 protein_coding Homo_sapiens 0 782
ENST00000481133 ZCCHC11-011 retained_intron Homo_sapiens 0 305
ENST00000481528 ZCCHC11-009 retained_intron Homo_sapiens 0 296
ENST00000484723 ZCCHC11-017 protein_coding Homo_sapiens 0 3413
ENST00000494469 ZCCHC11-007 protein_coding Homo_sapiens 0 815
ENST00000497120 ZCCHC11-010 retained_intron Homo_sapiens 0 876
ENST00000524582 ZCCHC11-018 protein_coding Homo_sapiens 0 446
ENST00000527941 ZCCHC11-020 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000528457 ZCCHC11-021 protein_coding Homo_sapiens 0 418
ENST00000528642 ZCCHC11-012 protein_coding Homo_sapiens 0 2490
ENST00000531722 ZCCHC11-019 protein_coding Homo_sapiens 0 747

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