C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubby like protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041819 Tulp1-001 ENSMUSG00000037446 10090 - 17:28351515-28365148 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderLiverOvaryENSMUST00000041819
Transcript ID Adrenal Bladder Liver Ovary
ENSMUST00000041819 0.059±0.00 0.039±0.00 0.019±0.01 0.569±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0002 VISTA 17:28043766-28646334
CIL_0002F1 CIL_0002F1_0002 CGP 17:28331671-28365182
CIL_0002F0 CIL_0002F0_0002 CGP 17:28351515-28517524

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0001895 IEA retina homeostasis
GO:0001917 IDA photoreceptor inner segment
GO:0005515 IPI protein binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0005886 ISS plasma membrane
GO:0006909 IEA phagocytosis
GO:0007602 IMP phototransduction
GO:0008020 IMP G-protein coupled photoreceptor activity
GO:0016358 IMP dendrite development
GO:0030054 IEA cell junction
GO:0042462 IMP eye photoreceptor cell development
GO:0042995 ISS cell projection
GO:0045202 IDA synapse
GO:0045494 IMP photoreceptor cell maintenance
GO:0050766 ISS positive regulation of phagocytosis
GO:0050908 IEA detection of light stimulus involved in visual perception
GO:0051015 ISS actin filament binding
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000229771 TULP1-003 protein_coding Homo_sapiens 0 1227
ENST00000322263 TULP1-004 protein_coding Homo_sapiens 0 1105
ENST00000360228 CACNA1A-001 protein_coding Homo_sapiens 0.00004 57
ENST00000373892 TULP1-002 retained_intron Homo_sapiens 0 499
ENST00000495781 TULP1-007 retained_intron Homo_sapiens 0 281
ENST00000496434 TULP1-006 retained_intron Homo_sapiens 0 361
ENST00000573710 CACNA1A-002 protein_coding Homo_sapiens 0.00004 57
ENST00000614066 TULP1-201 protein_coding Homo_sapiens 0 1199
ENST00000614285 CACNA1A-201 protein_coding Homo_sapiens 0.00004 57

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