C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 558
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034647 Zfp558-003 ENSMUSG00000074500 10090 - 9:18456192-18473559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034647
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034647 0.147±0.05 0.126±0.03 0.060±0.00 0.087±0.04 0.121±0.04 0.089±0.02 0.115±0.09 0.250±0.14 0.430±0.25 0.226±0.15 1.966±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UU CIL_0000UU_0002 CGP 9:18455575-18485292

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274599 ZNF300-201 protein_coding Homo_sapiens 0.00000000001 77
ENST00000276816 ZNF16-002 protein_coding Homo_sapiens 0.0000000001 73
ENST00000292841 ZNF585A-001 protein_coding Homo_sapiens 0.0000009 62
ENST00000301475 ZNF558-002 protein_coding Homo_sapiens 0 1040
ENST00000304060 ZNF440-001 protein_coding Homo_sapiens 0.0000005 62
ENST00000320451 ZNF121-004 protein_coding Homo_sapiens 0.0000000003 71
ENST00000339282 ZNF564-002 protein_coding Homo_sapiens 0.00000002 66
ENST00000355684 ZNF44-003 protein_coding Homo_sapiens 0.000000000002 79
ENST00000356109 ZNF44-002 protein_coding Homo_sapiens 0.000000000003 79
ENST00000356958 ZNF585A-201 protein_coding Homo_sapiens 0.0000007 62
ENST00000392157 ZNF585A-004 protein_coding Homo_sapiens 0.0000003 62
ENST00000393337 ZNF44-006 nonsense_mediated_decay Homo_sapiens 0.0000004 62
ENST00000394226 ZNF300-001 protein_coding Homo_sapiens 0.00000000001 77
ENST00000394909 ZNF16-001 protein_coding Homo_sapiens 0.0000000001 73
ENST00000397742 ZNF44-001 nonsense_mediated_decay Homo_sapiens 0.0000003 62
ENST00000398253 ZFP90-201 protein_coding Homo_sapiens 6e-21 108
ENST00000412638 ZNF847P-001 unprocessed_pseudogene Homo_sapiens 0.00000000005 73
ENST00000418100 ZNF724P-001 protein_coding Homo_sapiens 0.00000002 66
ENST00000418587 ZNF300-202 protein_coding Homo_sapiens 0.00000000001 77
ENST00000427179 ZNF300-002 protein_coding Homo_sapiens 0.00000000002 77
ENST00000429654 ZNF69-002 protein_coding Homo_sapiens 0.00000002 66
ENST00000431363 CTD-2006C1.6-001 transcribed_unprocessed_pseudogene Homo_sapiens 0.000000000005 77
ENST00000434822 ZNF625-ZNF20-002 nonsense_mediated_decay Homo_sapiens 0.00000000008 73
ENST00000439556 ZNF625-004 protein_coding Homo_sapiens 0.00000000007 73
ENST00000446148 ZNF300-203 protein_coding Homo_sapiens 0.00000000001 77
ENST00000455799 ZNF625-002 protein_coding Homo_sapiens 0.00000000008 73
ENST00000563169 ZFP90-010 protein_coding Homo_sapiens 3e-21 108
ENST00000564558 ZFP90-002 nonsense_mediated_decay Homo_sapiens 6e-21 108
ENST00000570495 ZFP90-001 protein_coding Homo_sapiens 6e-21 108
ENST00000571720 ZFP90-024 retained_intron Homo_sapiens 5e-21 108
ENST00000586602 ZNF121-003 protein_coding Homo_sapiens 0.000000001 71
ENST00000593450 ZNF209P-001 unprocessed_pseudogene Homo_sapiens 0.0000002 62
ENST00000593682 CTD-2192J16.20-001 nonsense_mediated_decay Homo_sapiens 0.00000005 66
ENST00000597304 ZNF558-007 retained_intron Homo_sapiens 0 1038
ENST00000601372 ZNF558-001 protein_coding Homo_sapiens 0 1040
ENST00000611477 ZNF16-201 protein_coding Homo_sapiens 0.0000000001 73
ENST00000620178 RP11-339B9.1-001 unprocessed_pseudogene Homo_sapiens 0.00000002 66

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