C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031122 Gabrb1-001 ENSMUSG00000029212 10090 + 5:71699932-72138389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031122
Transcript ID Adipose Adrenal Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031122 0.354±0.34 0.224±0.07 0.173±0.08 1.684±0.00 0.020±0.00 0.093±0.04 0.011±0.01 0.037±0.02 0.007±0.00 0.465±0.25 0.030±0.00 0.096±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001N0 CIL_0001N0_0002 CGP 5:71569734-72138389
CIL_0005LI CIL_0005LI_0003 CGP 5:71699932-72168183

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 ISS GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 ISS integral component of plasma membrane
GO:0006811 ISS ion transport
GO:0007165 IEA signal transduction
GO:0015276 ISS ligand-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034220 ISS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:0071420 ISS cellular response to histamine
GO:1902476 IEA chloride transmembrane transport
GO:1902711 ISS GABA-A receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295454 GABRB1-001 protein_coding Homo_sapiens 0 2344
ENST00000381582 GABRB1-002 retained_intron Homo_sapiens 0 470
ENST00000509366 GABRB1-004 processed_transcript Homo_sapiens 0 494
ENST00000510909 GABRB1-003 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000513567 GABRB1-005 protein_coding Homo_sapiens 0 560

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