C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) I polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029999 Polr1e-003 ENSMUSG00000028318 10090 + 4:45018662-45032365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000029999
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000029999 1.669±0.44 2.166±1.18 1.772±0.21 1.519±0.02 1.687±0.51 3.692±0.59 1.810±0.54 1.049±0.65 0.414±0.20 4.174±0.00 3.358±2.47 0.980±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0002 VISTA 4:44530265-45131018
CIL_0008YP CIL_0008YP_0002 VISTA 4:44551630-45152605
CIL_00080S CIL_00080S_0002 VISTA 4:44617363-45218981
CIL_0001OS CIL_0001OS_0002 CGP 4:44991242-45036565
CIL_00039W CIL_00039W_0002 CGP 4:45018583-45084604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001179 IDA RNA polymerase I transcription factor binding
GO:0001189 IDA RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377792 POLR1E-002 protein_coding Homo_sapiens 0 278
ENST00000377798 POLR1E-001 protein_coding Homo_sapiens 0 324
ENST00000442009 POLR1E-201 protein_coding Homo_sapiens 0 324

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