C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027173 Wdr12-001 ENSMUSG00000026019 10090 - 1:60069785-60097908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000027173
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000027173 0.703±0.04 0.607±0.17 1.318±0.51 0.362±0.05 0.277±0.00 0.228±0.06 0.304±0.02 0.994±0.51 0.300±0.05 0.345±0.08 0.614±0.03 0.562±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020R CIL_00020R_0002 CGP 1:59982490-60098645
CIL_00020W CIL_00020W_0002 CGP 1:60069785-60153953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000463 ISS maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 ISS maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005730 ISS nucleolus
GO:0007219 IPI Notch signaling pathway
GO:0008283 ISS cell proliferation
GO:0030687 ISS preribosome, large subunit precursor
GO:0043021 IEA ribonucleoprotein complex binding
GO:0070545 ISS PeBoW complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000012903 wdr12-001 protein_coding Danio_rerio 0 501
ENST00000261015 WDR12-001 protein_coding Homo_sapiens 0 1637
ENST00000463824 WDR12-004 retained_intron Homo_sapiens 0 344
ENST00000464820 WDR12-006 retained_intron Homo_sapiens 0 237
ENST00000467777 WDR12-005 retained_intron Homo_sapiens 0 241
ENST00000475611 WDR12-007 retained_intron Homo_sapiens 0 486
ENST00000477727 WDR12-008 retained_intron Homo_sapiens 0 416
ENST00000478869 WDR12-003 retained_intron Homo_sapiens 0 579
ENST00000513388 RP11-10L12.2-001 processed_pseudogene Homo_sapiens 0 1155
ENST00000561269 RP11-192M23.1-001 processed_pseudogene Homo_sapiens 0 1064

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