C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha motif domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022386 Samd4-001 ENSMUSG00000021838 10090 + 14:46882854-47103150 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000022386
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000022386 2.630±1.41 5.746±0.85 0.594±0.14 2.700±0.77 4.623±0.86 3.425±0.56 0.747±0.18 0.288±0.07 4.640±2.22 2.998±0.79 6.026±1.96 0.713±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0004OT CIL_0004OT_0002 CGP 14:46832134-47105817
CIL_000009 CIL_000009_0003 CGP 14:46882854-47189413

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0017148 IEA negative regulation of translation
GO:0030054 IEA cell junction
GO:0030371 IEA translation repressor activity
GO:0043005 IEA neuron projection
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0045727 IEA positive regulation of translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251091 SAMD4A-001 protein_coding Homo_sapiens 0 2121
ENST00000392067 SAMD4A-201 protein_coding Homo_sapiens 0 3875
ENST00000553988 SAMD4A-010 processed_transcript Homo_sapiens 0 416
ENST00000554335 SAMD4A-003 protein_coding Homo_sapiens 0 3552
ENST00000555091 SAMD4A-008 processed_transcript Homo_sapiens 0 499
ENST00000555112 SAMD4A-005 processed_transcript Homo_sapiens 0 1260
ENST00000555192 SAMD4A-006 protein_coding Homo_sapiens 0 990
ENST00000555719 SAMD4A-011 processed_transcript Homo_sapiens 0 418
ENST00000556069 SAMD4A-012 retained_intron Homo_sapiens 0 420
ENST00000557013 SAMD4A-004 retained_intron Homo_sapiens 0 752
ENST00000557692 SAMD4A-007 processed_transcript Homo_sapiens 0 752

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