C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RecQ protein-like 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021097 Recql5-001 ENSMUSG00000020752 10090 - 11:115892595-115933477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000021097
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021097 4.630±0.51 4.914±0.54 7.834±0.56 6.224±1.22 4.381±0.76 1.638±0.15 3.413±0.91 5.445±0.58 1.964±0.28 7.616±1.41 5.114±1.25 9.499±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IO CIL_0007IO_0002 CGP 11:115892595-115933477

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0003676 IEA nucleic acid binding
GO:0003678 ISS DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 ISS DNA replication
GO:0006281 ISS DNA repair
GO:0006310 IEA DNA recombination
GO:0007067 ISS mitotic nuclear division
GO:0008026 IEA ATP-dependent helicase activity
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0031965 IEA nuclear membrane
GO:0032508 ISS DNA duplex unwinding
GO:0034244 ISS negative regulation of transcription elongation from RNA polymerase II promoter
GO:0051304 ISS chromosome separation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317905 RECQL5-001 protein_coding Homo_sapiens 0 2588
ENST00000340830 RECQL5-004 protein_coding Homo_sapiens 0 1461
ENST00000420326 RECQL5-020 protein_coding Homo_sapiens 0 1463
ENST00000423245 RECQL5-002 protein_coding Homo_sapiens 0 2381
ENST00000443199 RECQL5-007 processed_transcript Homo_sapiens 0 1131
ENST00000578201 RECQL5-005 protein_coding Homo_sapiens 0 1731
ENST00000580078 RECQL5-010 protein_coding Homo_sapiens 0 593
ENST00000580707 RECQL5-014 protein_coding Homo_sapiens 0 809
ENST00000582464 RECQL5-011 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000583673 RECQL5-012 processed_transcript Homo_sapiens 0 222
ENST00000584999 RECQL5-003 protein_coding Homo_sapiens 0 1476

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