C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel Kb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006378 Clcnkb-001 ENSMUSG00000006216 10090 - 4:141404353-141416014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLungMuscleOvaryTestisENSMUST00000006378
Transcript ID Adipose Brain Breast Colon Kidney Lung Muscle Ovary Testis
ENSMUST00000006378 0.018±0.01 0.017±0.00 0.034±0.01 0.144±0.11 88.277±14.94 0.026±0.01 0.035±0.01 0.041±0.00 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QM CIL_0007QM_0002 VISTA 4:141236761-141837859
CIL_0001WZ CIL_0001WZ_0002 CGP 4:141384610-141416014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0030554 IEA adenyl nucleotide binding
GO:0034707 IEA chloride channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046872 IEA metal ion binding
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331433 CLCNKA-001 protein_coding Homo_sapiens 0 1781
ENST00000375692 CLCNKA-002 protein_coding Homo_sapiens 0 1772
ENST00000439316 CLCNKA-007 protein_coding Homo_sapiens 0 1496
ENST00000464764 CLCNKA-003 processed_transcript Homo_sapiens 0 638
ENST00000495784 CLCNKA-004 processed_transcript Homo_sapiens 0 477

Loading