C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000135230 chd7-001 ENSDARG00000075211 7955 - 2:21562193-21617220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000135230
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000135230 3.070±3.40 3.055±2.01 8.754±0.44 0.789±0.00 0.691±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IMP somitogenesis
GO:0001947 IMP heart looping
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0007368 IMP determination of left/right symmetry
GO:0008026 IEA ATP-dependent helicase activity
GO:0014029 IMP neural crest formation
GO:0016787 IEA hydrolase activity
GO:0016817 IEA hydrolase activity, acting on acid anhydrides
GO:0021602 IMP cranial nerve morphogenesis
GO:0030282 IMP bone mineralization
GO:0042472 IMP inner ear morphogenesis
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039267 Chd7-201 protein_coding Mus_musculus 6.02558e-44 185
ENSMUST00000051558 Chd7-001 protein_coding Mus_musculus 6.02558e-44 185
ENSMUST00000075922 Nfat5-002 protein_coding Mus_musculus 0.0007 53
ENSMUST00000077440 Nfat5-201 protein_coding Mus_musculus 0.0007 53
ENSMUST00000125721 Nfat5-005 protein_coding Mus_musculus 0.0007 53
ENSMUST00000133026 Nfat5-001 nonsense_mediated_decay Mus_musculus 0.0007 53
ENSMUST00000147588 Nfat5-010 protein_coding Mus_musculus 0.0007 53
ENSMUST00000151114 Nfat5-004 protein_coding Mus_musculus 0.0007 53
ENSMUST00000154474 Nfat5-007 nonsense_mediated_decay Mus_musculus 0.0007 53
ENSMUST00000169453 Nfat5-202 protein_coding Mus_musculus 0.0007 53
ENSMUST00000170391 Chd7-006 protein_coding Mus_musculus 1.00053e-42 180
ENST00000423902 CHD7-001 protein_coding Homo_sapiens 8.99634e-43 182

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