C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeo box A3a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000080466 hoxa3a-009 ENSDARG00000036231 7955 + 19:19233312-19235118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000080466
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000080466 1.068±0.44 0.529±0.00 0.966±0.00 0.036±0.00 1.499±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0006 UCNEbase 19:19094506-19320701
CIL_0006I0 CIL_0006I0_0001 CGP 19:19213175-19227976

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000242159 HOXA7-001 protein_coding Homo_sapiens 4e-20 104
ENST00000326902 GSX2-001 protein_coding Homo_sapiens 0.000009 57
ENST00000503800 GSX2-002 protein_coding Homo_sapiens 0.000006 57
ENST00000507839 GSX2-004 processed_transcript Homo_sapiens 0.000002 57
ENST00000523796 HOXA7-003 processed_transcript Homo_sapiens 8e-21 104
ENST00000548609 GSX2-003 processed_transcript Homo_sapiens 0.000003 57
ENST00000611459 GSX2-201 protein_coding Homo_sapiens 0.000006 57

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