C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeo box B5a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000025449 hoxb5a-001 ENSDARG00000013057 7955 + 3:23998932-24001336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000025449
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000025449 0.842±0.18 0.262±0.16 1.792±0.73 0.152±0.00 0.833±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000W8 CIL_0000W8_0001 CGP 3:23994945-24001336
CIL_0004DH CIL_0004DH_0001 CGP 3:23998932-24015223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001708 IMP cell fate specification
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0007420 IMP brain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049272 Hoxb5-001 protein_coding Mus_musculus 0 475
ENSMUST00000190470 Hoxb5-002 retained_intron Mus_musculus 0 298
ENST00000239151 HOXB5-001 protein_coding Homo_sapiens 0 497

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