C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000017975 rps18-001 ENSDARG00000020153 7955 - 19:18309520-18318937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000017975
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000017975 74.824±73.34 995.855±252.79 204.782±285.81 291.877±0.00 307.578±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AA CIL_0007AA_0001 CGP 19:18309520-18340857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 IBA cytosol
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0007275 IEA multicellular organismal development
GO:0015935 IBA small ribosomal subunit
GO:0019843 IEA rRNA binding
GO:0030529 IEA ribonucleoprotein complex
GO:0042254 IBA ribosome biogenesis
GO:0051726 IMP regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000008812 Rps18-001 protein_coding Mus_musculus 0 348
ENSMUST00000072050 Gm5321-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000074072 Gm10260-201 protein_coding Mus_musculus 0 326
ENSMUST00000077163 Gm11361-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000080443 Rps18-ps3-201 protein_coding Mus_musculus 0 309
ENSMUST00000116189 Gm12468-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000119199 Gm6630-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000120838 Rps18-ps1-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000121730 Gm15696-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000172799 Rps18-002 processed_transcript Mus_musculus 0 281
ENSMUST00000173323 Rps18-013 retained_intron Mus_musculus 0 198
ENSMUST00000174175 Rps18-005 retained_intron Mus_musculus 0 248
ENSMUST00000174609 Rps18-006 protein_coding Mus_musculus 0 257
ENSMUST00000174620 Rps18-012 retained_intron Mus_musculus 0 261
ENSMUST00000174745 Rps18-011 processed_transcript Mus_musculus 0 344
ENSMUST00000174758 Rps18-008 retained_intron Mus_musculus 0 279

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