C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neural retina leucine zipper
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561028 NRL-004 ENSG00000129535 9606 - 14:24080167-24115014 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F9 CIL_0003F9_0001 CGP 14:24070837-24115014
CIL_0003F6 CIL_0003F6_0001 CGP 14:24080107-24115014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 TAS:IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007468 TAS regulation of rhodopsin gene expression
GO:0007601 IEA visual perception
GO:0043522 IPI leucine zipper domain binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045872 IEA positive regulation of rhodopsin gene expression
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046548 IEA retinal rod cell development
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178694 Nrl-203 protein_coding Mus_musculus 0 785
ENSMUST00000062232 Nrl-201 protein_coding Mus_musculus 0 785
ENSMUST00000111404 Nrl-202 protein_coding Mus_musculus 0 785
ENSMUST00000127991 Dcaf11-012 processed_transcript Mus_musculus 5e-39 167
ENSMUST00000129310 Dcaf11-018 retained_intron Mus_musculus 5e-39 167
ENSMUST00000151245 Dcaf11-010 processed_transcript Mus_musculus 5e-39 167

Loading