C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 1 class VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217133 TUBB1-001 ENSG00000101162 9606 + 20:59019254-59026654 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B3 CIL_0001B3_0001 CGP 20:58995185-59026654
CIL_000695 CIL_000695_0002 CGP 20:59019254-59032382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051225 IEA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016399 Tubb1-001 protein_coding Mus_musculus 0 1423
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 813
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 606
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 603
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 571
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 547
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 538

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