C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3A, member RAS oncogene family
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031840 Rab3a 10090 + 8:70754679-70758677 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034301 Rab3a-001 70754711-70758635 protein_coding
  ENSMUST00000110090 Rab3a-003 70754724-70758635 protein_coding
  ENSMUST00000110092 Rab3a-002 70755510-70758635 protein_coding
  ENSMUST00000110093 Rab3a-004 70754679-70758677 protein_coding
  ENSMUST00000130468 Rab3a-006 70756457-70757700 retained_intron
  ENSMUST00000143118 Rab3a-005 70754703-70757262 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034301ENSMUST00000110090ENSMUST00000110092ENSMUST00000110093ENSMUST00000143118
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034301 12.728±3.73 48.372±3.77 10.834±0.90 114.803±17.45 10.156±3.02 13.312±1.59 25.584±1.51 10.195±0.74 3.099±0.77 14.442±2.30 10.807±1.84 17.703±6.64 2.415±0.48 2.148±0.75
ENSMUST00000110090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.354±0.00 N/A N/A
ENSMUST00000110092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.138±0.51 N/A N/A
ENSMUST00000110093 4.355±0.00 15.853±0.00 4.459±0.60 55.781±27.24 4.969±1.36 N/A 8.819±0.30 N/A 1.972±0.41 5.536±0.30 4.834±1.18 2.878±0.72 2.346±0.00 1.347±0.05
ENSMUST00000143118 N/A N/A N/A 534.536±0.00 N/A N/A N/A N/A N/A N/A N/A 18.454±0.00 N/A 3.881±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006BA CIL_0006BA_0002 CGP 8:70723720-70758677

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0001671 IEA ATPase activator activity
GO:0003016 IMP respiratory system process
GO:0005515 IPI protein binding
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0007005 IMP mitochondrion organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007409 IMP axonogenesis
GO:0008021 IDA synaptic vesicle
GO:0008022 IEA protein C-terminus binding
GO:0009791 IMP post-embryonic development
GO:0015031 IEA protein transport
GO:0016079 IMP:ISS synaptic vesicle exocytosis
GO:0016188 IMP synaptic vesicle maturation
GO:0017157 IDA regulation of exocytosis
GO:0030324 IMP lung development
GO:0030424 ISS axon
GO:0031489 IEA myosin V binding
GO:0031630 IMP regulation of synaptic vesicle fusion to presynaptic membrane
GO:0031982 IEA vesicle
GO:0032781 IEA positive regulation of ATPase activity
GO:0036465 ISS synaptic vesicle recycling
GO:0043195 IDA terminal bouton
GO:0043229 IEA intracellular organelle
GO:0043234 IEA protein complex
GO:0048172 IMP regulation of short-term neuronal synaptic plasticity
GO:0048489 TAS synaptic vesicle transport
GO:0048790 IMP maintenance of presynaptic active zone structure
GO:0050975 IMP sensory perception of touch
GO:0051020 IEA GTPase binding
GO:0051117 IEA ATPase binding
GO:0051602 IMP response to electrical stimulus
GO:1900271 TAS regulation of long-term synaptic potentiation
GO:1903307 IEA positive regulation of regulated secretory pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043835 rab3ab RAB3A, member RAS oncogene family, b protein_coding Danio_rerio
ENSG00000105649 RAB3A RAB3A, member RAS oncogene family protein_coding Homo_sapiens

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