C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: active BCR-related gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017631 Abr 10090 - 11:76416734-76622314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065028 Abr-006 76416751-76468465 protein_coding
  ENSMUST00000072740 Abr-001 76416734-76571535 protein_coding
  ENSMUST00000094012 Abr-002 76416734-76509419 protein_coding
  ENSMUST00000108407 Abr-201 76416735-76508995 protein_coding
  ENSMUST00000108408 Abr-003 76419104-76495456 protein_coding
  ENSMUST00000130364 Abr-007 76454544-76468298 nonsense_mediated_decay
  ENSMUST00000131059 Abr-009 76423048-76437220 processed_transcript
  ENSMUST00000137261 Abr-005 76485743-76494984 processed_transcript
  ENSMUST00000141442 Abr-010 76458474-76495005 retained_intron
  ENSMUST00000151526 Abr-004 76464238-76493929 protein_coding
  ENSMUST00000155035 Abr-008 76479057-76622314 protein_coding
  ENSMUST00000176024 Abr-012 76479113-76613395 protein_coding
  ENSMUST00000176179 Abr-011 76479003-76577727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065028ENSMUST00000072740ENSMUST00000108407ENSMUST00000108408ENSMUST00000141442
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065028 N/A 8.999±1.73 N/A 55.743±2.98 N/A N/A N/A N/A 0.470±0.00 N/A N/A 3.053±0.52 0.685±0.00 N/A
ENSMUST00000072740 3.500±0.84 14.637±4.36 N/A 12.837±5.92 N/A N/A N/A 1.758±0.30 N/A N/A N/A 4.084±0.87 N/A 0.608±0.18
ENSMUST00000108407 4.390±2.97 N/A 5.881±0.72 38.538±29.72 2.734±0.75 12.244±2.98 2.908±0.28 4.688±0.79 0.863±0.51 7.158±0.99 0.956±0.16 8.562±4.78 6.303±6.42 2.082±0.48
ENSMUST00000108408 N/A N/A N/A 42.482±0.00 N/A N/A N/A N/A N/A N/A 1.085±0.00 13.206±0.00 5.444±5.27 0.746±0.00
ENSMUST00000141442 N/A N/A N/A N/A 4.358±0.00 N/A N/A N/A N/A N/A N/A 7.891±1.34 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012J CIL_00012J_0002 CGP 11:76406952-76622314
CIL_0001Q6 CIL_0001Q6_0002 CGP 11:76416734-76673676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 TAS GTPase activator activity
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0007420 IGI brain development
GO:0016020 IEA membrane
GO:0030036 IGI actin cytoskeleton organization
GO:0030336 IGI negative regulation of cell migration
GO:0030675 IDA Rac GTPase activator activity
GO:0032496 IMP response to lipopolysaccharide
GO:0032855 IDA positive regulation of Rac GTPase activity
GO:0035556 IEA intracellular signal transduction
GO:0042472 IGI inner ear morphogenesis
GO:0043314 IGI negative regulation of neutrophil degranulation
GO:0043547 TAS positive regulation of GTPase activity
GO:0050728 IMP negative regulation of inflammatory response
GO:0050766 IGI positive regulation of phagocytosis
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059587 active BCR-related protein_coding Danio_rerio
ENSDARG00000095180 active BCR-related protein_coding Danio_rerio
ENSG00000159842 ABR active BCR-related protein_coding Homo_sapiens

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