C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: matrix metallopeptidase 1 (interstitial collagenase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196611 MMP1 9606 - 11:102789920-102798160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315274 MMP1-001 102789920-102798160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENST00000315274
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000315274 0.817±0.00 0.540±0.00 0.013±0.00 0.441±0.00 0.601±0.27 0.023±0.00 1.195±0.00 0.064±0.00 2.733±1.60 2.379±1.12 6.048±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MJ CIL_0002MJ_0001 CGP 11:102789920-102843803

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004222 IDA:IEA metalloendopeptidase activity
GO:0005509 IEA calcium ion binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0006508 IEA proteolysis
GO:0007596 TAS blood coagulation
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IEA extracellular matrix
GO:0044267 TAS cellular protein metabolic process
GO:0050900 TAS leukocyte migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000041620 Mmp1b matrix metallopeptidase 1b (interstitial collagenase) protein_coding Mus_musculus
ENSMUSG00000043089 Mmp1a matrix metallopeptidase 1a (interstitial collagenase) protein_coding Mus_musculus

Loading