C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prenyl (decaprenyl) diphosphate synthase, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000148459 PDSS1 9606 + 10:26697659-26746798 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000376215 PDSS1-001 26697659-26746798 protein_coding
  ENST00000470978 PDSS1-003 26734651-26746782 processed_transcript
  ENST00000473224 PDSS1-004 26705308-26724019 processed_transcript
  ENST00000491711 PDSS1-002 26720343-26746541 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverMuscleOvaryENST00000376215ENST00000491711
Transcript ID Kidney Liver Muscle Ovary
ENST00000376215 2.314±0.00 2.416±0.00 2.281±0.00 9.984±0.00
ENST00000491711 N/A N/A 2.146±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000R4 CIL_0000R4_0001 CGP 10:26438203-26746798
CIL_0000R7 CIL_0000R7_0001 CGP 10:26697659-26861087

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000010 IDA trans-hexaprenyltranstransferase activity
GO:0005739 IEA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0006744 IEA ubiquinone biosynthetic process
GO:0008299 IDA:IEA isoprenoid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0046982 IDA protein heterodimerization activity
GO:0050347 IEA trans-octaprenyltranstransferase activity
GO:0051290 IEA protein heterotetramerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017910 pdss1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein_coding Danio_rerio
ENSMUSG00000026784 Pdss1 prenyl (solanesyl) diphosphate synthase, subunit 1 protein_coding Mus_musculus

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