C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 41
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000146063 TRIM41 9606 + 5:181222499-181235809 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315073 TRIM41-002 181223290-181235809 protein_coding
  ENST00000351937 TRIM41-001 181223290-181235808 protein_coding
  ENST00000503114 TRIM41-005 181224058-181235807 nonsense_mediated_decay
  ENST00000508930 TRIM41-003 181223290-181235806 retained_intron
  ENST00000510072 TRIM41-010 181233706-181234818 processed_transcript
  ENST00000514219 TRIM41-011 181233409-181235397 nonsense_mediated_decay
  ENST00000515223 TRIM41-006 181224166-181235803 retained_intron
  ENST00000515499 TRIM41-009 181222499-181234326 protein_coding
  ENST00000515834 TRIM41-007 181224691-181233524 retained_intron
  ENST00000617715 TRIM41-201 181224039-181224812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315073ENST00000351937ENST00000503114ENST00000508930ENST00000510072ENST00000515223ENST00000515499ENST00000515834
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315073 3.761±0.00 4.192±0.00 0.377±0.00 8.330±7.05 7.242±0.00 1.483±0.90 2.821±2.66 8.348±0.00 3.477±0.00 N/A 10.149±0.00 5.450±2.54 4.453±1.43 10.588±0.00
ENST00000351937 3.226±0.00 N/A N/A 6.187±0.00 5.583±0.00 N/A N/A N/A N/A N/A N/A N/A 1.178±0.00 9.287±5.05
ENST00000503114 N/A 5.241±0.00 N/A 1.038±0.00 N/A 1.336±0.00 2.919±0.00 N/A 3.227±0.00 N/A 5.243±0.00 2.498±0.00 1.720±0.53 6.917±0.00
ENST00000508930 N/A N/A N/A N/A 0.587±0.00 0.811±0.00 0.155±0.00 2.315±0.00 N/A 1.527±0.00 N/A 1.768±0.00 1.928±0.00 N/A
ENST00000510072 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.085±0.00 N/A N/A N/A N/A
ENST00000515223 0.697±0.00 1.604±0.00 N/A 0.233±0.00 N/A 0.402±0.00 N/A 1.043±0.00 0.183±0.00 N/A N/A 1.161±0.17 N/A 5.372±3.94
ENST00000515499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.331±0.00 37.487±0.00
ENST00000515834 N/A N/A N/A N/A 0.101±0.00 N/A N/A 0.153±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000040365 Trim41 tripartite motif-containing 41 protein_coding Mus_musculus

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